MGG ( Microbetag Gui )
MGG Progress Documentation
WEEK 15 & WEEK 16
- MGGEdgePanel: Displays and filters edge-related information within MGGCytoPanel.
- ShowResultsPanel: Dynamically supplies relevant network data to MGGCytoPanel.
MGGEdgePanel
public class MGGEdgePanel extends AbstractMggPanel {
JButton fetchEdges;
JPanel subScorePanel;
JPanel scorePanel;
JButton deleteEdges;
private Map<CyNetwork, Map<String, Boolean> > colors;
private JSlider scoreSlider;
public MGGEdgePanel(final MGGManager manager) {
super(manager);
filters.get(currentNetwork).put("flashweave-score", new HashMap<> ());
colors = new HashMap<> ();
colors.put(currentNetwork, new HashMap<> ());
init();
revalidate();
repaint();
}
private void init() {
setLayout(new GridBagLayout());
{
EasyGBC c = new EasyGBC();
JComponent scoreSlider = createFilterSlider("flashweave-score", "flashweave-score", currentNetwork, true, 100.0);
{
scorePanel = new JPanel();
scorePanel.setLayout(new GridBagLayout());
EasyGBC d = new EasyGBC();
scorePanel.add(scoreSlider, d.anchor("northwest").expandHoriz());
JPanel controlPanel = createControlPanel();
controlPanel.setBorder(BorderFactory.createEmptyBorder(0,10,0,0));
scorePanel.add(controlPanel, d.anchor("west").down().noExpand());
}
add(scorePanel, c.down().anchor("west").expandHoriz());
/*
* { subScorePanel = new JPanel(); subScorePanel.setLayout(new GridBagLayout());
* EasyGBC d = new EasyGBC(); subScorePanel.add(createSubScorePanel(),
* d.anchor("west").expandHoriz()); subScorePanel.add(new JPanel(),
* d.down().anchor("west").expandBoth()); }
*
* JScrollPane scrollPane = new JScrollPane(subScorePanel,
* JScrollPane.VERTICAL_SCROLLBAR_NEVER,
* JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
*
* add(scrollPane, c.down().anchor("west").expandBoth()); // add(new JPanel(),
* c.down().anchor("west").expandBoth());
*/ }
}
private JPanel createControlPanel() {
JPanel controlPanel = new JPanel();
GridLayout layout = new GridLayout(2,2);
//layout.setVgap(0);
controlPanel.setLayout(layout);
{
fetchEdges = new JButton("Fetch extra edges");
fetchEdges.setToolTipText("Decrease the network score to the chosen .");
fetchEdges.setFont(labelFont);
fetchEdges.setEnabled(false);
controlPanel.add(fetchEdges);
fetchEdges.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
if (filters.containsKey(currentNetwork)
&& filters.get(currentNetwork).containsKey("flashweave-score")
&& filters.get(currentNetwork).get("flashweave-score").containsKey("flashweave-score")) {
Map<String, Object> args = new HashMap<>();
args.put("network", "current");
args.put("flashweave-score", String.valueOf(filters.get(currentNetwork).get("flashweave-score").get("flashweave-score").doubleValue()));
manager.executeCommand("string", "change flashweave-score", args, null);
fetchEdges.setEnabled(false);
}
}
});
}
{
deleteEdges = new JButton("Delete hidden edges");
deleteEdges.setToolTipText("Increase the network confidence to the chosen score.");
deleteEdges.setFont(labelFont);
deleteEdges.setEnabled(false);
controlPanel.add(deleteEdges);
deleteEdges.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
//ChangeConfidenceTaskFactory tf = new ChangeConfidenceTaskFactory(manager);
if (filters.containsKey(currentNetwork)
&& filters.get(currentNetwork).containsKey("flashweave-score")
&& filters.get(currentNetwork).get("flashweave-score").containsKey("flashweave-score")) {
Map<String, Object> args = new HashMap<>();
args.put("network", "current");
args.put("flashweave-score", String.valueOf(filters.get(currentNetwork).get("flashweave-score").get("flashweave-score").doubleValue()));
manager.executeCommand("string", "change flashweave-score", args, null);
deleteEdges.setEnabled(false);
}
}
});
}
controlPanel.setAlignmentX(Component.LEFT_ALIGNMENT);
controlPanel.setMaximumSize(new Dimension(100,100));
return controlPanel;
}
void undoFilters() {
CyNetworkView view = manager.getCurrentNetworkView();
if (view != null) {
for (View<CyEdge> edge: view.getEdgeViews()) {
edge.clearValueLock(BasicVisualLexicon.EDGE_VISIBLE);
}
}
}
@Override
void doFilter(String type) {
if ("flashweave-score".equals(type)) {
CyNetworkView networkView = manager.getCurrentNetworkView();
if (networkView != null) {
CyNetwork network = networkView.getModel();
double minScore = (double) scoreSlider.getValue();
for (CyEdge edge : network.getEdgeList()) {
View<CyEdge> edgeView = networkView.getEdgeView(edge);
if (edgeView != null) {
Double edgeScore = network.getRow(edge).get("flashweave-score", Double.class);
if (edgeScore != null && edgeScore < minScore) {
edgeView.setLockedValue(BasicVisualLexicon.EDGE_VISIBLE, false);
} else {
edgeView.setLockedValue(BasicVisualLexicon.EDGE_VISIBLE, true);
}
}
}
networkView.updateView();
}
}
}
@Override
double initFilter(String type, String text) {
if ("flashweave-score".equals(type)) {
try {
double initialScore = Double.parseDouble(text);
scoreSlider.setValue((int) initialScore);
doFilter("flashweave-score");
return initialScore;
} catch (NumberFormatException e) {
// Handle invalid input
}
}
return 0;
}
public void updateScore() {
scorePanel.removeAll();
EasyGBC d = new EasyGBC();
JComponent scoreSlider = createFilterSlider("flashweave-score", "flashweave-score", currentNetwork, true, 100.0);
scorePanel.add(scoreSlider, d.anchor("northwest").expandHoriz());
JPanel controlPanel = createControlPanel();
controlPanel.setBorder(BorderFactory.createEmptyBorder(0,10,0,0));
scorePanel.add(controlPanel, d.anchor("west").down().noExpand());
}
public void networkChanged(CyNetwork newNetwork) {
this.currentNetwork = newNetwork;
if (!filters.containsKey(currentNetwork)) {
filters.put(currentNetwork, new HashMap<>());
filters.get(currentNetwork).put("flashweave-score", new HashMap<>());
}
if (!colors.containsKey(currentNetwork)) {
colors.put(currentNetwork, new HashMap<>());
}
updateScore();
}
public void selectedEdges(Collection<CyEdge> edges) {
}
}
ShowResultsPanelTask
public class ShowResultsPanelTask extends AbstractTask {
final MGGManager manager;
final ShowResultsPanelTaskFactory factory;
final boolean show;
public ShowResultsPanelTask(final MGGManager manager,
final ShowResultsPanelTaskFactory factory, boolean show) {
this.manager = manager;
this.factory = factory;
this.show = show;
}
public void run(TaskMonitor monitor) {
monitor.setTitle("Show/hide results panel");
CySwingApplication swingApplication = manager.getService(CySwingApplication.class);
CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST);
// If the panel is not already registered, create it
if (cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG") < 0) {
CytoPanelComponent2 panel = new MGGCytoPanel(manager);
// Register it
manager.registerService(panel, CytoPanelComponent.class, new Properties());
if (cytoPanel.getState() == CytoPanelState.HIDE)
cytoPanel.setState(CytoPanelState.DOCK);
} else {
int compIndex = cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG");
Component panel = cytoPanel.getComponentAt(compIndex);
if (panel instanceof CytoPanelComponent2) {
// Unregister it
manager.unregisterService(panel, CytoPanelComponent.class);
manager.setCytoPanel(null);
}
}
// factory.reregister();
}
public static boolean isPanelRegistered(MGGManager manager) {
CySwingApplication swingApplication = manager.getService(CySwingApplication.class);
CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST);
if (cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG") >= 0)
return true;
return false;
}
}